After installing version 0.5 I noticed massive performance difference on on gpu that is not directly connected to the motherboard. I used 1x extension to better cool the gpu but devices connected with pcie 1x extension work significantly slower and how slow depends on PCIE generation. PCIe gen 1 runs up to 6-8 times slower, PCIE gen 2 runs 3-4 times slower and PCIE gen3 runs 2-3 times slower.
There was no issue with pcie link size before v0.5 so something must have changed, any ideas about how this could be resolved or at least what maybe causing the problem?